In an earlier post, I detailed how to get PL/R up and running on Mac OS X. Recently, I’ve had reason to want PL/Python on my system too, but I have not been able to get it going using my self-compiled version of PostgreSQL. It seems to compile OK, but each time I tried
CREATE EXTENSION plpython2u, the connection crashed. I suspect that the issue was related to differences in how the versions of (MacPorts-supplied) Python and PostgreSQL I had were compiled.
After toying with the idea of switching back to Ubuntu/Linux Mint (which inevitably means running two operating systems, as Linux doesn’t have everything I need), I thought I would give the MacPorts version of PostgreSQL a spin. However, the first time I tried, I could not get PL/R to compile. The second time I tried the
+perl +python27 version of the port
postgresql95 and it worked fine. I think this version differs in that it is compiled locally—rather than just being a binary like the standard version—and presumably is something like the
postgresql-server-dev-9.5 package available for Ubuntu.
1. Installed PostgreSQL using MacPorts.
2. Compiled PL/R.
3. Did the usual admin stuff to get PostgreSQL up and running and CREATE EXTENSION plr;
4. Restored my database from a backup.
1. Installed PostgreSQL using MacPorts..
Of course, I assume you’ve got MacPorts up and running on your system.
sudo port install postgresql95 +perl +python27 sudo port install postgresql95-server
2. Install PL/R. Note that this is exactly as I’ve done before, but using a different version of
cd ~ wget http://www.joeconway.com/plr/plr-220.127.116.11.tar.gz tar xzf plr-18.104.22.168.tar.gz cd plr R_HOME="/Library/Frameworks/R.framework/Resources" USE_PGXS=1 PG_CONFIG="/opt/local/lib/postgresql95/bin/pg_config" make sudo R_HOME="/Library/Frameworks/R.framework/Resources" USE_PGXS=1 PG_CONFIG="/opt/local/lib/postgresql95/bin/pg_config" make install
3. Set up PostgreSQL
I first need to initialize the database cluster and then get the server running. The following comes straight from the on-screen instructions supplied with the MacPorts port
postgresql95-server. I wonder if it would work if I used the existing (and hidden)
_postgres user. I also wonder if I should use the
--encoding=UTF8 --locale=en_US options I used in my earlier installation.
sudo mkdir -p /opt/local/var/db/postgresql95/defaultdb sudo chown postgres:postgres /opt/local/var/db/postgresql95/defaultdb sudo su postgres -c '/opt/local/lib/postgresql95/bin/initdb -D /opt/local/var/db/postgresql95/defaultdb'
Note that MacPorts creates a launch daemon. To load it now and to make sure it launches on system start, do:
sudo defaults write /Library/LaunchDaemons/org.macports.postgresql95-server.plist Disabled -bool false sudo launchctl load /Library/LaunchDaemons/org.macports.postgresql95-server.plist
Then I did some set-up to get PL/R going.
sudo su - postgres /opt/local/lib/postgresql95/bin/psql -U postgres -d template1
I tend to do my work using a database named “crsp” (originally I just had CRSP data in there) under my own user name. So I set stuff up accordingly. Within psql:
CREATE USER igow SUPERUSER CREATEDB CREATEROLE PASSWORD 'xxxxx'; CREATE EXTENSION plr; CREATE EXTENSION plperl; CREATE EXTENSION plpython2u; CREATE DATABASE crsp OWNER igow; \q
4. Restore my database from a backup.
/opt/local/lib/postgresql95/bin/psql -U postgres -d postgres -f /Volumes/2TB/data/pg/crsp_all.backup